PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44062.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARF
Protein Properties Length: 1079aa    MW: 119573 Da    PI: 6.7942
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44062.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.3e-23126227199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ +l
  KFK44062.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFV--RDEKSQL 220
                 99*****************************954.4444.48************************************************..4567778 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  KFK44062.1 221 MLGIRRA 227
                 ****997 PP

2Auxin_resp118.55.3e-39252334183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha +++s+F++++nPras+seFvv+++k++kal+ +vs+GmRf+m+feted+  rr++Gtv+g+sdldpvrW++S+Wr+L+
  KFK44062.1 252 AAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQ 334
                 799******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-42120241IPR015300DNA-binding pseudobarrel domain
CDDcd100176.72E-21125226No hitNo description
SMARTSM010191.0E-24126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534126228IPR003340B3 DNA binding domain
PfamPF023621.6E-21126227IPR003340B3 DNA binding domain
PfamPF065077.5E-34252334IPR010525Auxin response factor
PfamPF023097.0E-109491037IPR033389AUX/IAA domain
PROSITE profilePS5174525.5839511044IPR000270PB1 domain
SuperFamilySSF542771.63E-89651029No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
MKAPSNGFHP NPTEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ  60
TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS  240
SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF  300
ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEVEPVITP  360
FYICPPPFFR PKYPRQPGMP DDDLDIENAF KRAMPWMGDD FGMKDAQSSM FPGLSLVQWM  420
SMQQNNPLSG AATTQLPSAL SSYNLPNNFG SNDPSKLLNF QSPNLSPAHS QFNKPNMGNH  480
ISQQMQAQPA MVKSQQQQQQ QQQMQQQVQM SHQQLQQHHQ QQQQGVYNTG SVNNGASVAT  540
NQVSCQNPQQ SIAFSQSQLQ QQSMLSNGAK MTHQNIVSAG NKGSPQMTSY AQEMQYQQQL  600
ELHNSSQLLR NQQEQSSLHS LQQTMSQNPQ QLQMQQQSSK PSPSQQLQLQ LLQKLQQQQQ  660
QSMPPVSSSL QPQLLQQTQS HQLQQLLSSQ NQQPLAHGNN SFSASTFMQP PPQIQVSHQP  720
QGQMNNKPLV AAGRSHSGHT DGEAPSCSTS PSANNTGHDN VSPTNFLSRN QQQVSASDSV  780
FDRASNPVQE LYTKTNSRIN QGTVNLKSAA EQFKFKGAVT DQIDVSTAGT TYCPDVVGPA  840
QQQQTFPLPS FGFDGDCQSH HPRNNLAFAG NLEAVTTDAL YSQKDFQNLV PNYGNAPRDI  900
ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GINDSGIMNG GLWPNQAQRM RTYTKVQKRG  960
SVGRSIDVTR YSGYDELRHD LARMFGIEGQ LEDPQTSDWK LVYTDHENDI LLVGDDPWEE  1020
FVNCVQNIKI LSSAEVQQMS LDGDLVAIPT TNQACSETDS GNAWKVHYED TSAAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1721535545388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934670.0AB493467.1 Arabidopsis thaliana At1g19220 mRNA for hypothetical protein, partial cds, clone: RAAt1g19220.
GenBankATU536720.0U53672.2 Arabidopsis thaliana early auxin-induced IAA22 mRNA, complete cds.
GenBankAY6697940.0AY669794.1 Arabidopsis thaliana clone C105352 ARF19 (At1g19220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477125.10.0PREDICTED: auxin response factor 19
SwissprotQ8RYC80.0ARFS_ARATH; Auxin response factor 19
TrEMBLA0A087HPL00.0A0A087HPL0_ARAAL; Auxin response factor
STRINGfgenesh1_pg.C_scaffold_10017390.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19